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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30259517_30261114_R

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30259517 - 30261114
Intron Length:
1598

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
ATATTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
GAATCCTTATCA
Flanking Amino Acid:
SFAVGIDFHAGNDTIYWTDM
Intron Amino Acid Position:
1778

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
93.3
21.1
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
81.1
0.7
0.8
74.2
40.7
Minor 5ss
41
-1
3
59.7
44.8
Minor BPS
66.2
0.5
1.6
70.79
40.7

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191