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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30261247_30263252_R

Intron Information:

Intron Rank:
33
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30261247 - 30263252
Intron Length:
2006

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAACTG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTCCCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TTCTCATTACCT
Flanking Amino Acid:
NLQKNRMSCKGVESFLMYSV
Intron Amino Acid Position:
1734

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
68.8
42.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
76.9
0.6
0.7
75.2
29.4
Minor 5ss
34.9
-1.7
3.3
47.4
48
Minor BPS
65.1
0.55
1.9
84.99
41.5

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191