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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30266426_30278029_R

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30266426 - 30278029
Intron Length:
11604

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
GAAAATTTTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCCTCTTAATT
Flanking Amino Acid:
LPKATALTIMDKKLWWADQN
Intron Amino Acid Position:
1645

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
77.9
38.6
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.6
0.37
1.1
57.6
46.6
Minor 5ss
34.6
-1.7
2.7
34.2
41.4
Minor BPS
75.7
0.89
1.1
84.73
36.1

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191