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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_302727_305327_R

Intron Information:

Intron Rank:
2
Intron Class:
minor-like
Intron Phase:
1
Intron Coordinates:
302727 - 305327
Intron Length:
2601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAC|GTATCCTTT
5'SS Class:
strong_minor
3'SS Sequence:
GTAGCACTTTCAG|T
3'SS Class:
degenerate_minor
U2 Branch Point Sequence:
AAATGAA
U12 Branch Point Sequence:
TTTTCCCTACTG
Flanking Amino Acid:
QMLLSYLRKRLHLTGTKYGC
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.9
0.09
1.4
62.3
44.7
Major BPS
58.9
0.22
1
49.8
35.1
Major PPT
68.6
0.42
1
63.1
43
Minor 5ss
94.6
1.5
0.8
89.3
22.6
Minor BPS
58.6
0.13
2
71.93
41.3

Associated Gene:

Gene:
AOX1
Ensembl Gene ID:
ENSAPLG00000008708
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022758
264624 - 306968
42345
ENSAPLT00000018331
263911 - 307009
43099
ENSAPLT00000009339
268146 - 306968
38823
ENSAPLT00000045156
267812 - 306968
39157
ENSAPLT00000025359
264624 - 306968
42345