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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30282963_30283274_R

Intron Information:

Intron Rank:
29
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30282963 - 30283274
Intron Length:
312

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTTAAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
ACATTTTCAATA
Flanking Amino Acid:
PQCLAVHPVKGKLYWTDGNT
Intron Amino Acid Position:
1563

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
1
77.7
33.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
82.2
0.73
0.9
87.5
23.3
Minor 5ss
39.2
-1.2
3.1
48.1
47.5
Minor BPS
52.3
0.07
1.4
57.93
36.1

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191