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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30300397_30302481_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30300397 - 30302481
Intron Length:
2085

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GGG|GCATATATT
5'SS Class:
major
3'SS Sequence:
CTTCTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTCTTTTGAAAT
Flanking Amino Acid:
QYCRLPLKLRDPFEAFIIFS
Intron Amino Acid Position:
1114

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.5
0.37
1.3
74.6
41.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
84.5
0.78
0.8
76.2
37.8
Minor 5ss
36.3
-1.5
4
50.5
46.1
Minor BPS
60.9
0.42
1.5
77.37
39.2

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191