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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30314710_30316221_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30314710 - 30316221
Intron Length:
1512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGCTATT
5'SS Class:
major
3'SS Sequence:
TCATTTTTCTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
ACTCTCTGAAAT
Flanking Amino Acid:
DETKTNCTKEETPSPGRCNG
Intron Amino Acid Position:
1004

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.2
81.8
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
73.3
0.52
1
78.7
33.3
Minor 5ss
45.8
-0.4
3
68.3
42.6
Minor BPS
54.7
0.23
1.6
69.97
40.4

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191