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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30323291_30325072_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30323291 - 30325072
Intron Length:
1782

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTTGACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTGCAT
U12 Branch Point Sequence:
TTTGTCTTGACA
Flanking Amino Acid:
NEDESNKTCAARTCQIDQFA
Intron Amino Acid Position:
882

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
80.5
31.7
Major BPS
62.7
0.32
1.4
75
39.9
Major PPT
79.7
0.67
1
76.3
37.8
Minor 5ss
35.5
-1.7
3.1
50.2
45.8
Minor BPS
74.3
0.76
1.3
81.71
33.5

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191