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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30325199_30330593_R

Intron Information:

Intron Rank:
15
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
30325199 - 30330593
Intron Length:
5395

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTATGTATT
5'SS Class:
weak_major
3'SS Sequence:
TTTCTTTTTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAG
U12 Branch Point Sequence:
TTTCTTAGGAGA
Flanking Amino Acid:
DGSDEHSEICFNHSCPDDQF
Intron Amino Acid Position:
840

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.1
76.8
37.9
Major BPS
67.5
0.43
1.5
65.7
43.2
Major PPT
94.6
1
0.6
88.2
29.1
Minor 5ss
52.4
0.08
2.5
78.4
35.5
Minor BPS
41.8
-0.6
1.9
56.75
36.2

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191