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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30351884_30395562_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
30351884 - 30395562
Intron Length:
43679

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCTTTCTACA
Flanking Amino Acid:
PKAIAVDPISGKLFFTDYGN
Intron Amino Acid Position:
296

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
1
77.8
33.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92.3
0.95
0.6
87.9
22.3
Minor 5ss
41.1
-1
3.1
48.1
47.5
Minor BPS
49.7
-0
1.8
68.48
37.5

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191