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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30506257_30604073_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
30506257 - 30604073
Intron Length:
97817

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TGTCTTTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATAAAA
U12 Branch Point Sequence:
TATGTAAGAAAT
Flanking Amino Acid:
PDDSDESLDTCPEEVDFKCT
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
65.3
0.38
1
71.6
30.1
Major PPT
85.7
0.8
0.7
84.8
30
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
41.4
-0.5
2
61.59
41.3

Associated Gene:

Gene:
LRP1B
Ensembl Gene ID:
ENSAPLG00000023161
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024637
30099962 - 30604152
504191