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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30876298_30879342_F

Intron Information:

Intron Rank:
125968
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
30876298 - 30879342
Intron Length:
3045

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
CACGCTGATCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
AATCTTTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
74.8
35.3
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
56.1
0.14
1
46.7
40.4
Minor 5ss
38.2
-1.3
2.7
49.5
40.3
Minor BPS
59.6
0.38
1.1
70.67
34

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017866
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000033906
30875365 - 30882089
6725