Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30879452_30881270_F

Intron Information:

Intron Rank:

125969

Intron Class:

major

Intron Phase:

Intron Coordinates:

30879452 - 30881270

Intron Length:

1819

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAATGACC

5'SS Class:

strong_major

3'SS Sequence:

CGCTCCCGCTCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACATAT

U12 Branch Point Sequence:

AGCTAGTTACAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.71

72.4

37.1

Major BPS

66.4

0.41

61.3

Major PPT

64.4

0.32

0.9

61.1

35.1

Minor 5ss

33.6

-1.9

3.1

44.3

43.2

Minor BPS

40.7

-0.6

2.3

57.23

44.9

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000017866

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000041463

30877911 - 30882089

4179

ENSAPLT00000033906

30875365 - 30882089

6725