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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30898679_30913762_F

Intron Information:

Intron Rank:
139547
Intron Class:
major
Intron Phase:
Intron Coordinates:
30898679 - 30913762
Intron Length:
15084

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
GCTATTCTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTCTTTTTAAGA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
80.7
31.6
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
78.8
0.65
0.9
69.3
41.6
Minor 5ss
36.5
-1.5
3.6
53.2
45
Minor BPS
60.2
0.32
1.6
66.82
40.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025036
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020757
30898198 - 30914595
16398