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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_30940656_30940737_F

Intron Information:

Intron Rank:
124345
Intron Class:
major
Intron Phase:
Intron Coordinates:
30940656 - 30940737
Intron Length:
82

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
CTCATCTGTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
CTTTCCTCATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
74.8
0.56
0.9
72.5
37.5
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
65.2
0.55
1.9
84.24
42.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017037
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018411
30936809 - 30942926
6118