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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31002029_31007909_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31002029 - 31007909
Intron Length:
5881

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CACTTCTCATTT
Flanking Amino Acid:
NKTRHKYASGVKLNDLKMDP
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.8
38.7
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
75.5
0.57
1
79.6
31.6
Minor 5ss
33.5
-1.9
2.8
34.2
41.4
Minor BPS
47.3
-0.1
1.8
60.34
43.9

Associated Gene:

Gene:
KYNU
Ensembl Gene ID:
ENSAPLG00000008142
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025810
31000681 - 31060693
60013