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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31008100_31013174_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31008100 - 31013174
Intron Length:
5075

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGAATT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCCTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
TTTCCCTCCACA
Flanking Amino Acid:
CIPKVKDLPPTDLTLVNGEE
Intron Amino Acid Position:
57

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.5
0.72
0.9
83.4
27.7
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
81.8
0.72
0.7
76.5
25.7
Minor 5ss
35.7
-1.6
3.2
49.9
40.5
Minor BPS
59.9
0.31
2
77.44
39.2

Associated Gene:

Gene:
KYNU
Ensembl Gene ID:
ENSAPLG00000008142
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008461
31007910 - 31060693
52784
ENSAPLT00000038797
31000681 - 31060693
60013
ENSAPLT00000036241
31000681 - 31061052
60372
ENSAPLT00000025810
31000681 - 31060693
60013