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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31019973_31025456_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31019973 - 31025456
Intron Length:
5484

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAGGTGTG
5'SS Class:
major
3'SS Sequence:
TTCTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TTTTCTTTATTT
Flanking Amino Acid:
CIVDLMADLVGAQRHEVALM
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.2
0.67
1
68.8
42.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
90.2
0.9
0.7
89.1
26.1
Minor 5ss
35
-1.7
3.5
45
44.5
Minor BPS
76.2
0.9
1.4
91.47
32.2

Associated Gene:

Gene:
KYNU
Ensembl Gene ID:
ENSAPLG00000008142
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008461
31007910 - 31060693
52784
ENSAPLT00000038797
31000681 - 31060693
60013
ENSAPLT00000036241
31000681 - 31061052
60372
ENSAPLT00000025810
31000681 - 31060693
60013