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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31025519_31028274_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31025519 - 31028274
Intron Length:
2756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATGTCTT
5'SS Class:
strong_major
3'SS Sequence:
AAATCTCTTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATGTAAT
U12 Branch Point Sequence:
ATTACACTAATG
Flanking Amino Acid:
GLTVNLHLQMYAVESQLRLH
Intron Amino Acid Position:
146

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
0.9
76.2
39
Major BPS
75.6
0.64
1.1
75.7
36.5
Major PPT
73.9
0.54
0.9
66.7
39.4
Minor 5ss
46.4
-0.4
2.8
64.2
41.4
Minor BPS
48.7
-0.2
2
60.99
40.5

Associated Gene:

Gene:
KYNU
Ensembl Gene ID:
ENSAPLG00000008142
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008461
31007910 - 31060693
52784