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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31029810_31036060_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31029810 - 31036060
Intron Length:
6251

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGATTG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAA
U12 Branch Point Sequence:
AGTATATTAAAT
Flanking Amino Acid:
PRITKAGQEKGCFVGFDLAH
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
72.5
39.9
Major BPS
82.6
0.81
0.8
82.2
24.5
Major PPT
85.6
0.8
0.7
80.7
24.6
Minor 5ss
40.2
-1.1
3.4
55.2
49
Minor BPS
52.5
0.16
1.7
70.68
39.3

Associated Gene:

Gene:
KYNU
Ensembl Gene ID:
ENSAPLG00000008142
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036241
31000681 - 31061052
60372
ENSAPLT00000025810
31000681 - 31060693
60013
ENSAPLT00000008461
31007910 - 31060693
52784
ENSAPLT00000038797
31000681 - 31060693
60013