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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31059122_31060540_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31059122 - 31060540
Intron Length:
1419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTGAGTAAA
5'SS Class:
major
3'SS Sequence:
TTCTATTTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
GTGACCTGAATT
Flanking Amino Acid:
FKELEKRGVACDMREPNALR
Intron Amino Acid Position:
401

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
72.6
33.5
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
88.8
0.87
0.7
84.2
30.4
Minor 5ss
32.5
-2
2.8
43.1
43.9
Minor BPS
62.8
0.48
1.5
74.74
41.8

Associated Gene:

Gene:
KYNU
Ensembl Gene ID:
ENSAPLG00000008142
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038797
31000681 - 31060693
60013
ENSAPLT00000036241
31000681 - 31061052
60372
ENSAPLT00000025810
31000681 - 31060693
60013
ENSAPLT00000008461
31007910 - 31060693
52784