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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31076873_31094536_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
31076873 - 31094536
Intron Length:
17664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGGAGT
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TCTTCTTTTATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91
0.97
0.8
82.5
37
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
83.8
0.76
0.8
81.5
36
Minor 5ss
34
-1.8
3.3
48.8
47
Minor BPS
62.3
0.24
1.7
66.64
41.8

Associated Gene:

Gene:
ARHGAP15
Ensembl Gene ID:
ENSAPLG00000008021
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025308
31076813 - 31407565
330753
ENSAPLT00000008343
31076813 - 31407565
330753