About Basic Search Advanced Search Downloads
Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31140883_31247146_F


Intron Information:

Intron Rank:
6

Intron Class:
major

Intron Phase:
0

Intron Coordinates:
31140883 - 31247146

Intron Length:
106264

Sequence Information:

Terminal Dinucleotides:
GT-AG

5'SS Sequence:
CAG|GTAAGAGGC

5'SS Class:
strong_major

3'SS Sequence:
ATCCCTCCCCCAG|A

3'SS Class:
major_PPT

U2 Branch Point Sequence:
TACTTAC

U12 Branch Point Sequence:
CTGTACTTACCT

Flanking Amino Acid:
EKSSRKNVFQITTVSGNEFL

Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev

Major 5ss
89.3
0.93
0.8
73.3
36.4

Major BPS
73.7
0.59
0.9
63.6
35.1

Major PPT
71.2
0.48
0.8
62.1
34.1

Minor 5ss
30.8
-2.2
3.3
41.8
45

Minor BPS
59.6
0.38
1.9
76.54
45.9

Associated Gene:

Gene:
ARHGAP15

Ensembl Gene ID:

Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length

31076813 - 31407565
330753

31076813 - 31407565
330753