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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31280169_31302268_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31280169 - 31302268
Intron Length:
22100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
ATGATCTAAAAT
Flanking Amino Acid:
RLCIKAVERRGLEVDGIYRV
Intron Amino Acid Position:
309

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.7
1.03
0.7
89.2
17.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
87.7
0.85
0.7
85.1
29.7
Minor 5ss
36.4
-1.5
2.9
48.7
47.5
Minor BPS
49.8
0.06
1.8
67.9
42.8

Associated Gene:

Gene:
ARHGAP15
Ensembl Gene ID:
ENSAPLG00000008021
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025308
31076813 - 31407565
330753
ENSAPLT00000008343
31076813 - 31407565
330753