Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31502070_31509417_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31502070 - 31509417

Intron Length:

7348

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGTTGTT

5'SS Class:

major

3'SS Sequence:

TGCTTCCTCGTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTGTGAT

U12 Branch Point Sequence:

TGCGTGTGATCT

Flanking Amino Acid:

PDIVRKHLYKGEMAGFSWAA

Intron Amino Acid Position:

385

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.2

0.67

78.1

36.6

Major BPS

63.5

0.34

1.4

57.1

49.4

Major PPT

74.3

0.55

0.8

69.6

31.2

Minor 5ss

37.3

-1.4

3.6

57.9

46.8

Minor BPS

39.9

-0.6

2.3

56.47

Associated Gene:

Gene:

GTDC1

Ensembl Gene ID:

ENSAPLG00000007900

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024505

31501986 - 31678592

176607