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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31510281_31519152_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31510281 - 31519152
Intron Length:
8872

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTTTT
5'SS Class:
major
3'SS Sequence:
TTTTAATCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTATTTTTAATC
Flanking Amino Acid:
VLGECFTDVPGLKLYIAVVI
Intron Amino Acid Position:
427

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.2
79
37.9
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
85.2
0.79
0.8
82.4
34
Minor 5ss
52.2
0.08
2.8
76.1
39.6
Minor BPS
75.9
0.79
1
78.34
30.9

Associated Gene:

Gene:
GTDC1
Ensembl Gene ID:
ENSAPLG00000007900
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008223
31509418 - 31670064
160647