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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31589690_31622733_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31589690 - 31622733
Intron Length:
33044

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACACAG
5'SS Class:
major
3'SS Sequence:
TCCTTGTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGAACAC
U12 Branch Point Sequence:
AGGCGGTGAACA
Flanking Amino Acid:
MQTVPTNPNYRILFASSVLN
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.1
0.59
1.2
62.5
43.8
Major BPS
48.4
-0.1
1.2
55.1
40.5
Major PPT
84.7
0.78
0.8
79.6
32.4
Minor 5ss
36.9
-1.5
3.1
47.4
48
Minor BPS
40
-0.7
2.3
48.97
41.3

Associated Gene:

Gene:
GTDC1
Ensembl Gene ID:
ENSAPLG00000007900
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008216
31415833 - 31656008
240176
ENSAPLT00000048020
31518905 - 31622915
104011
ENSAPLT00000024993
31514888 - 31656130
141243
ENSAPLT00000024505
31501986 - 31678592
176607
ENSAPLT00000008223
31509418 - 31670064
160647