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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31622945_31626112_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
31622945 - 31626112
Intron Length:
3168

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCTGAA
5'SS Class:
major
3'SS Sequence:
TTGTCATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATTTCTAAAGT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1.2
68.7
38.3
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.4
0.73
0.9
73.9
40.7
Minor 5ss
36.5
-1.5
3.4
49.1
47.1
Minor BPS
60.5
0.41
2
80.35
41.7

Associated Gene:

Gene:
GTDC1
Ensembl Gene ID:
ENSAPLG00000007900
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024993
31514888 - 31656130
141243