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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31622945_31669817_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31622945 - 31669817
Intron Length:
46873

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGCTCT
5'SS Class:
strong_major
3'SS Sequence:
TTGTCATTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TATTTCTAAAGT
Flanking Amino Acid:
EGTALTQPQTDSGQKRSSRK
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
1
72.5
39.7
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.4
0.73
0.9
73.9
40.7
Minor 5ss
45.4
-0.5
3.1
65.8
45.3
Minor BPS
60.5
0.41
2
80.35
41.7

Associated Gene:

Gene:
GTDC1
Ensembl Gene ID:
ENSAPLG00000007900
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008223
31509418 - 31670064
160647