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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31670176_31678469_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
31670176 - 31678469
Intron Length:
8294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAGATG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCCCTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
TTTTGCAAAATG
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75.8
39.8
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
83.5
0.75
0.8
81.6
30.5
Minor 5ss
35.2
-1.7
3.3
47.8
47.9
Minor BPS
47.1
-0.3
2.3
63.85
44.5

Associated Gene:

Gene:
GTDC1
Ensembl Gene ID:
ENSAPLG00000007900
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024505
31501986 - 31678592
176607