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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31718889_31720931_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31718889 - 31720931
Intron Length:
2043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTGT
5'SS Class:
strong_major
3'SS Sequence:
GGTTCTCTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAC
U12 Branch Point Sequence:
GTGTCACTGACG
Flanking Amino Acid:
RKYQRKQGFQGELLDGTPDY
Intron Amino Acid Position:
962

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
81.2
33.8
Major BPS
61.3
0.28
1
52.7
34.2
Major PPT
80.1
0.68
0.9
73.4
37
Minor 5ss
41.3
-1
3
58.7
45.8
Minor BPS
47.8
-0.3
2
57.69
43.6

Associated Gene:

Gene:
ZEB2
Ensembl Gene ID:
ENSAPLG00000007687
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032659
31709286 - 31777808
68523
ENSAPLT00000019929
31709286 - 31753516
44231
ENSAPLT00000007999
31709931 - 31753516
43586
ENSAPLT00000034977
31709286 - 31814689
105404