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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31723962_31726457_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31723962 - 31726457
Intron Length:
2496

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGGGGGGC
5'SS Class:
major
3'SS Sequence:
TTTTTTCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTCAC
U12 Branch Point Sequence:
TCTTGCATAAAA
Flanking Amino Acid:
MVTHKPGTDQHQMLTQGAGN
Intron Amino Acid Position:
268

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
61.4
37.5
Major BPS
73.5
0.58
0.9
75.4
28.3
Major PPT
91.1
0.92
0.6
84.9
30
Minor 5ss
22.7
-3.1
3.5
31.5
43.1
Minor BPS
51.1
0.03
2.1
69.53
42.5

Associated Gene:

Gene:
ZEB2
Ensembl Gene ID:
ENSAPLG00000007687
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032659
31709286 - 31777808
68523
ENSAPLT00000019929
31709286 - 31753516
44231
ENSAPLT00000007999
31709931 - 31753516
43586
ENSAPLT00000034977
31709286 - 31814689
105404