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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31727534_31734047_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31727534 - 31734047
Intron Length:
6514

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGTGT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCGTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
TGTACTCAAACC
Flanking Amino Acid:
AIQTTGNNGTVKNANCTSDF
Intron Amino Acid Position:
133

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.2
0.95
0.8
79.5
36.8
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
78.8
0.65
0.8
76.9
31.7
Minor 5ss
38.5
-1.3
3.4
55.9
48.3
Minor BPS
48.3
-0.1
2
64.58
40.8

Associated Gene:

Gene:
ZEB2
Ensembl Gene ID:
ENSAPLG00000007687
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032659
31709286 - 31777808
68523
ENSAPLT00000019929
31709286 - 31753516
44231
ENSAPLT00000007999
31709931 - 31753516
43586
ENSAPLT00000034977
31709286 - 31814689
105404