About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31734120_31739669_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31734120 - 31739669
Intron Length:
5550

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCGG
5'SS Class:
major
3'SS Sequence:
GCTTATTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
GCTTATTTCACA
Flanking Amino Acid:
EILQASVDGPEEMKEDYDTM
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
55.2
49
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
78
0.63
0.9
71.7
37.9
Minor 5ss
28.8
-2.4
3.4
38.1
46.9
Minor BPS
51.3
0.03
1.9
64.6
42

Associated Gene:

Gene:
ZEB2
Ensembl Gene ID:
ENSAPLG00000007687
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032659
31709286 - 31777808
68523
ENSAPLT00000019929
31709286 - 31753516
44231
ENSAPLT00000007999
31709931 - 31753516
43586
ENSAPLT00000034977
31709286 - 31814689
105404