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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31739928_31777689_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
31739928 - 31777689
Intron Length:
37762

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTTTTCCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
0.9
80.7
33.7
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
33.7
-1.9
2.8
42.7
38.3
Minor BPS
55.3
0.16
2
74.67
37.4

Associated Gene:

Gene:
ZEB2
Ensembl Gene ID:
ENSAPLG00000007687
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032659
31709286 - 31777808
68523