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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31739928_31814551_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31739928 - 31814551
Intron Length:
74624

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTAAGCAGC
5'SS Class:
major
3'SS Sequence:
TTTTTTTCCACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
TTTTTTTCCACA
Flanking Amino Acid:
RKQANPRRKNVVNYENVVET
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1
67.4
44
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
91.4
0.93
0.6
87.9
22.3
Minor 5ss
40.2
-1.1
2.9
53
44
Minor BPS
55.3
0.16
2
74.67
37.4

Associated Gene:

Gene:
ZEB2
Ensembl Gene ID:
ENSAPLG00000007687
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034977
31709286 - 31814689
105404