Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_318805_319349_R

Intron Information:

Intron Rank:

134548

Intron Class:

major

Intron Phase:

Intron Coordinates:

318805 - 319349

Intron Length:

545

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGATAT

5'SS Class:

strong_major

3'SS Sequence:

TTCTTCTTTGCAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TGCTGAA

U12 Branch Point Sequence:

TTTTCCCCAAGC

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.1

1.02

0.7

86.8

22.9

Major BPS

0.42

1.1

57.3

41.7

Major PPT

92.1

0.95

0.6

88.1

21.8

Minor 5ss

39.6

-1.2

3.1

55.7

48.5

Minor BPS

54.4

0.12

2.2

75.8

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019699

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000018871

311721 - 319464

7744

ENSAPLT00000020618

311721 - 319464

7744