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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_31985764_31985881_F

Intron Information:

Intron Rank:
141959
Intron Class:
major
Intron Phase:
Intron Coordinates:
31985764 - 31985881
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
TTGTCTTCTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGCAAT
U12 Branch Point Sequence:
GCTACCACAGCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
69.6
37.9
Major BPS
53
0.07
1.4
62.5
41.7
Major PPT
85
0.79
0.8
77.5
36.9
Minor 5ss
35.6
-1.6
2.9
44.4
43.5
Minor BPS
44.6
-0.3
2
63.31
46

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026426
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040904
31985661 - 31986713
1053