About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_32037228_32037722_F

Intron Information:

Intron Rank:
129418
Intron Class:
major
Intron Phase:
Intron Coordinates:
32037228 - 32037722
Intron Length:
495

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTGG
5'SS Class:
major
3'SS Sequence:
TCCTCCCTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TCCTCCCTAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
60.6
46.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
70.1
0.45
0.8
65.9
28.7
Minor 5ss
42.8
-0.8
2.9
47.3
48.1
Minor BPS
64.5
0.45
1.7
71.63
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019603
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027631
32023796 - 32038088
14293