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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_32073012_32073091_F

Intron Information:

Intron Rank:
130881
Intron Class:
major
Intron Phase:
Intron Coordinates:
32073012 - 32073091
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGTGA
5'SS Class:
strong_major
3'SS Sequence:
CATTCCTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAT
U12 Branch Point Sequence:
AGGTCTTTAATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.9
71.8
36.2
Major BPS
87.2
0.92
0.9
87.6
25.6
Major PPT
83.9
0.76
0.8
80.9
30.7
Minor 5ss
30.7
-2.2
3.2
38
46.8
Minor BPS
66.6
0.38
1.3
62.17
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020288
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040784
32062936 - 32073218
10283
ENSAPLT00000040735
32072878 - 32073678
801
ENSAPLT00000032598
32068303 - 32075006
6704