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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_32073203_32073500_F

Intron Information:

Intron Rank:
130884
Intron Class:
major
Intron Phase:
Intron Coordinates:
32073203 - 32073500
Intron Length:
298

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTACTGATGTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
ACACCCTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
82.6
30.5
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
67.7
0.4
1.1
66.5
43.8
Minor 5ss
48.7
-0.1
2.8
73.2
37.2
Minor BPS
59.9
0.39
1.8
72.84
43.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020288
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040735
32072878 - 32073678
801