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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_32073203_32074949_F

Intron Information:

Intron Rank:
130882
Intron Class:
major
Intron Phase:
Intron Coordinates:
32073203 - 32074949
Intron Length:
1747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTTTT
5'SS Class:
major
3'SS Sequence:
TTCCTTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
GTTTCCTTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
82.6
30.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
85.5
0.8
0.8
80.3
30.3
Minor 5ss
48.7
-0.1
2.8
73.2
37.2
Minor BPS
73
0.72
1.5
80.17
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020288
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000032598
32068303 - 32075006
6704