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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_32322295_32359691_R

Intron Information:

Intron Rank:
144128
Intron Class:
major
Intron Phase:
Intron Coordinates:
32322295 - 32359691
Intron Length:
37397

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
CTCCCTGCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
CTTTGTTTACTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.3
0.83
1
83.5
27.9
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
69.3
0.44
0.9
60.6
35.2
Minor 5ss
36.8
-1.5
3.4
53.7
43.8
Minor BPS
50
-0
2
65.01
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024787
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043271
32212869 - 32360230
147362