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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3234792_3237123_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3234792 - 3237123
Intron Length:
2332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTACGTACC
5'SS Class:
major
3'SS Sequence:
GTTCTTTTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TGAATATCAATT
Flanking Amino Acid:
LLVSEGSCATDAGSGSGDGV
Intron Amino Acid Position:
69

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1.1
70.3
40.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
85.5
0.8
0.7
84.1
30.8
Minor 5ss
36.4
-1.5
2.9
47.4
41.2
Minor BPS
47.1
-0.1
1.8
63.95
40

Associated Gene:

Gene:
TMEFF2
Ensembl Gene ID:
ENSAPLG00000014055
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014678
3234587 - 3339940
105354