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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_3237151_3294876_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3237151 - 3294876
Intron Length:
57726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAGCC
5'SS Class:
strong_major
3'SS Sequence:
TTCCACCAAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
TCTTTACTAATG
Flanking Amino Acid:
TDAGSGSGDGVNEGSGETNQ
Intron Amino Acid Position:
78

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.95
0.8
76
31.7
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
64.3
0.32
1
59
35.8
Minor 5ss
31.7
-2.1
3.3
42.5
44.5
Minor BPS
49.2
-0.2
2
60.58
41.7

Associated Gene:

Gene:
TMEFF2
Ensembl Gene ID:
ENSAPLG00000014055
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014678
3234587 - 3339940
105354