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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_32454711_32462278_R

Intron Information:

Intron Rank:
138638
Intron Class:
major
Intron Phase:
Intron Coordinates:
32454711 - 32462278
Intron Length:
7568

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TGTTTTATCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
87.5
0.84
0.6
81.2
30.9
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
48.6
-0
2
72.64
38.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022094
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036253
32454221 - 32464877
10657