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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_32462364_32464000_R

Intron Information:

Intron Rank:
138639
Intron Class:
major
Intron Phase:
Intron Coordinates:
32462364 - 32464000
Intron Length:
1637

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTCCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
GTGGTTTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
25.6
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
83.4
0.75
0.6
82.1
22.7
Minor 5ss
35.3
-1.7
3.2
50.4
46
Minor BPS
53.6
0.19
1.4
66
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022094
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043595
32445951 - 32464877
18927
ENSAPLT00000036253
32454221 - 32464877
10657