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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_32609348_32609724_R

Intron Information:

Intron Rank:
140595
Intron Class:
major
Intron Phase:
Intron Coordinates:
32609348 - 32609724
Intron Length:
377

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTATTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TGTTTATTCATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.8
78.1
26.4
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
78
0.63
0.8
73.3
36.2
Minor 5ss
34.2
-1.8
2.8
36.8
41.9
Minor BPS
50.7
0.02
2
68.66
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022986
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045478
32609178 - 32610311
1134