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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_32696629_32766277_R

Intron Information:

Intron Rank:
153473
Intron Class:
major
Intron Phase:
Intron Coordinates:
32696629 - 32766277
Intron Length:
69649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTATT
5'SS Class:
strong_major
3'SS Sequence:
GTTCCTTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AAGTCTGTGACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
0.9
86.3
29
Major BPS
100
1.24
0.5
100
0
Major PPT
72.4
0.5
1
64.9
41.2
Minor 5ss
49.5
-0
2.5
68.8
35.6
Minor BPS
51.3
0.12
2
69.63
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030032
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034505
32683047 - 32801668
118622