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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_7_32806271_32813203_R

Intron Information:

Intron Rank:
154998
Intron Class:
major
Intron Phase:
Intron Coordinates:
32806271 - 32813203
Intron Length:
6933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTCAG
5'SS Class:
major
3'SS Sequence:
GTACTGATTTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TCAAAATTAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.2
0.6
1.1
63.4
42.5
Major BPS
83
0.82
0.8
82
24.9
Major PPT
71
0.47
1
66.5
43.8
Minor 5ss
39.7
-1.2
2.8
49.6
46.6
Minor BPS
49.9
0.08
1.8
68.07
42.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030868
Chromosome:
7

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026324
32806103 - 32814308
8206